Skill Set

Bioinformatics

  • Genome assembly and annotation
  • Functional genomics
  • Network analysis
  • Unimodal and multimodal (single-cell and bulk) data analyses

Programming Languages

  • R
  • Python
  • C

Statistics

  • Linear and non-linear models (multiple linear regression, generalized linear models, nonlinear regression)
  • Hypothesis testing (t-test, Wilcoxon rank-sum test, ANOVA, ANCOVA)
  • Dimensionality reductions (PCA, PLS-DA, UMAP, t-SNE)

Machine Learning

  • Supervised (classification and regression)
  • Unsupervised (clustering, dimensionality reductions)
  • Self-supervised (contrastive and noncontrastive)

Wet-lab Techniques

Molecular biology

  • PCR
  • qPCR
  • Western blotting
  • Genetic transformation
  • Sanger sequencing
  • Next generation sequencing (NextSeq 2000)
  • Flow cytometry

Microbiology

  • Bacterial culture
  • Microscopy
  • Pathogen identification

Biotechnology

  • Fermentation
  • Plant tissue culture
  • Testing bioactive propeties of compopunds in animal models